Getting Started
Tutorials
Manual
Contributing
Citing
GitHub
PyPI
Anaconda
Index
_
|
A
|
B
|
C
|
D
|
E
|
F
|
G
|
H
|
I
|
L
|
M
|
N
|
O
|
P
|
R
|
S
|
T
|
V
|
W
|
X
|
Y
|
Z
_
__init__() (pept.base.Filter method)
(pept.base.IterableSamples method)
(pept.base.LineDataFilter method)
(pept.base.PEPTObject method)
(pept.base.PointDataFilter method)
(pept.base.Reducer method)
(pept.base.Transformer method)
(pept.base.VoxelsFilter method)
(pept.LineData method)
(pept.Pipeline method)
(pept.Pixels method)
(pept.plots.PlotlyGrapher method)
(pept.plots.PlotlyGrapher2D method)
(pept.PointData method)
(pept.scanners.ADACGeometricEfficiency method)
(pept.simulation.Simulator method)
(pept.TimeWindow method)
(pept.tracking.BirminghamMethod method)
(pept.tracking.Centroids method)
(pept.tracking.Condition method)
(pept.tracking.Cutpoints method)
(pept.tracking.FPI method)
(pept.tracking.HDBSCAN method)
(pept.tracking.Interpolate method)
(pept.tracking.LinesCentroids method)
(pept.tracking.Minpoints method)
(pept.tracking.Remove method)
(pept.tracking.Segregate method)
(pept.tracking.SplitAll method)
(pept.tracking.SplitLabels method)
(pept.tracking.Stack method)
(pept.tracking.Velocity method)
(pept.tracking.Voxelize method)
(pept.utilities.ChunkReader method)
(pept.Voxels method)
A
adac_forte() (in module pept.scanners)
ADACGeometricEfficiency (class in pept.scanners)
add_lines() (pept.Pixels method)
(pept.plots.PlotlyGrapher method)
(pept.plots.PlotlyGrapher2D method)
(pept.Voxels method)
add_noise() (pept.simulation.Simulator method)
add_noise_and_spread() (pept.simulation.Simulator method)
add_pixels() (pept.plots.PlotlyGrapher method)
(pept.plots.PlotlyGrapher2D method)
add_points() (pept.plots.PlotlyGrapher method)
(pept.plots.PlotlyGrapher2D method)
add_spread() (pept.simulation.Simulator method)
add_timeseries() (pept.plots.PlotlyGrapher2D method)
add_trace() (pept.plots.PlotlyGrapher method)
(pept.plots.PlotlyGrapher2D method)
add_traces() (pept.plots.PlotlyGrapher method)
(pept.plots.PlotlyGrapher2D method)
add_voxels() (pept.plots.PlotlyGrapher method)
all() (pept.Pixels method)
(pept.Voxels method)
any() (pept.Pixels method)
(pept.Voxels method)
append_indices (pept.tracking.Cutpoints property)
(pept.tracking.Minpoints property)
argmax() (pept.Pixels method)
(pept.Voxels method)
argmin() (pept.Pixels method)
(pept.Voxels method)
argpartition() (pept.Pixels method)
(pept.Voxels method)
argsort() (pept.Pixels method)
(pept.Voxels method)
astype() (pept.Pixels method)
(pept.Voxels method)
attrs (pept.base.IterableSamples property)
(pept.LineData property)
(pept.PointData property)
(pept.Voxels property)
B
base (pept.Pixels attribute)
(pept.Voxels attribute)
BirminghamMethod (class in pept.tracking)
byteswap() (pept.Pixels method)
(pept.Voxels method)
C
centroid() (pept.tracking.LinesCentroids static method)
Centroids (class in pept.tracking)
change_sampling_times() (pept.simulation.Simulator method)
change_shape() (pept.simulation.Simulator method)
change_trajectory() (pept.simulation.Simulator method)
choose() (pept.Pixels method)
(pept.Voxels method)
ChunkReader (class in pept.utilities)
chunksize (pept.utilities.ChunkReader property)
circles2d() (in module pept.processing)
clip() (pept.Pixels method)
(pept.Voxels method)
columns (pept.base.IterableSamples property)
(pept.LineData property)
(pept.PointData property)
(pept.tracking.Remove property)
compress() (pept.Pixels method)
(pept.Voxels method)
Condition (class in pept.tracking)
conditions (pept.tracking.Condition property)
conj() (pept.Pixels method)
(pept.Voxels method)
conjugate() (pept.Pixels method)
(pept.Voxels method)
copy() (pept.base.Filter method)
(pept.base.IterableSamples method)
(pept.base.LineDataFilter method)
(pept.base.PEPTObject method)
(pept.base.PointDataFilter method)
(pept.base.Reducer method)
(pept.base.Transformer method)
(pept.base.VoxelsFilter method)
(pept.LineData method)
(pept.Pipeline method)
(pept.Pixels method)
(pept.plots.PlotlyGrapher method)
(pept.PointData method)
(pept.scanners.ADACGeometricEfficiency method)
(pept.tracking.BirminghamMethod method)
(pept.tracking.Centroids method)
(pept.tracking.Condition method)
(pept.tracking.Cutpoints method)
(pept.tracking.FPI method)
(pept.tracking.HDBSCAN method)
(pept.tracking.Interpolate method)
(pept.tracking.LinesCentroids method)
(pept.tracking.Minpoints method)
(pept.tracking.Remove method)
(pept.tracking.Segregate method)
(pept.tracking.SplitAll method)
(pept.tracking.SplitLabels method)
(pept.tracking.Stack method)
(pept.tracking.Velocity method)
(pept.tracking.Voxelize method)
(pept.Voxels method)
create_figure() (pept.plots.PlotlyGrapher method)
(pept.plots.PlotlyGrapher2D method)
ctypes (pept.Pixels attribute)
(pept.Voxels attribute)
cube_trace() (pept.Voxels method)
cubes_traces() (pept.Voxels method)
cumprod() (pept.Pixels method)
(pept.Voxels method)
cumsum() (pept.Pixels method)
(pept.Voxels method)
cutoffs (pept.tracking.Cutpoints property)
(pept.tracking.Minpoints property)
Cutpoints (class in pept.tracking)
D
data (pept.base.IterableSamples property)
(pept.LineData property)
(pept.Pixels attribute)
(pept.PointData property)
(pept.Voxels attribute)
diagonal() (pept.Pixels method)
(pept.Voxels method)
distance_matrix() (pept.tracking.LinesCentroids static method)
dot() (pept.Pixels method)
(pept.Voxels method)
dtype (pept.Pixels attribute)
(pept.Voxels attribute)
dump() (pept.Pixels method)
(pept.Voxels method)
dumps() (pept.Pixels method)
(pept.Voxels method)
E
eg() (pept.scanners.ADACGeometricEfficiency method)
empty() (pept.Pixels static method)
(pept.Voxels static method)
equalise_axes() (pept.plots.PlotlyGrapher method)
(pept.plots.PlotlyGrapher2D method)
equalise_separate() (pept.plots.PlotlyGrapher2D method)
extra_attrs() (pept.base.IterableSamples method)
(pept.LineData method)
(pept.PointData method)
F
fig (pept.plots.PlotlyGrapher property)
(pept.plots.PlotlyGrapher2D property)
file_lines (pept.utilities.ChunkReader property)
fill() (pept.Pixels method)
(pept.Voxels method)
Filter (class in pept.base)
filters (pept.Pipeline property)
find_cutpoints() (in module pept.utilities)
find_minpoints() (in module pept.utilities)
fit() (pept.base.Filter method)
(pept.base.LineDataFilter method)
(pept.base.PointDataFilter method)
(pept.base.Reducer method)
(pept.base.VoxelsFilter method)
(pept.Pipeline method)
(pept.tracking.BirminghamMethod method)
(pept.tracking.Centroids method)
(pept.tracking.Condition method)
(pept.tracking.Cutpoints method)
(pept.tracking.FPI method)
(pept.tracking.HDBSCAN method)
(pept.tracking.Interpolate method)
(pept.tracking.LinesCentroids method)
(pept.tracking.Minpoints method)
(pept.tracking.Remove method)
(pept.tracking.Segregate method)
(pept.tracking.SplitAll method)
(pept.tracking.SplitLabels method)
(pept.tracking.Stack method)
(pept.tracking.Velocity method)
(pept.tracking.Voxelize method)
fit_sample() (pept.base.Filter method)
(pept.base.LineDataFilter method)
(pept.base.PointDataFilter method)
(pept.base.VoxelsFilter method)
(pept.Pipeline method)
(pept.tracking.BirminghamMethod method)
(pept.tracking.Centroids method)
(pept.tracking.Condition method)
(pept.tracking.Cutpoints method)
(pept.tracking.FPI method)
(pept.tracking.HDBSCAN method)
(pept.tracking.Interpolate method)
(pept.tracking.LinesCentroids method)
(pept.tracking.Minpoints method)
(pept.tracking.Remove method)
(pept.tracking.SplitLabels method)
(pept.tracking.Velocity method)
(pept.tracking.Voxelize method)
flags (pept.Pixels attribute)
(pept.Voxels attribute)
flat (pept.Pixels attribute)
(pept.Voxels attribute)
flatten() (pept.Pixels method)
(pept.Voxels method)
FPI (class in pept.tracking)
from_lines() (pept.Pixels static method)
(pept.Voxels static method)
G
get_cutoff() (pept.Pixels static method)
(pept.Voxels static method)
getfield() (pept.Pixels method)
(pept.Voxels method)
group_by_column() (in module pept.utilities)
H
HDBSCAN (class in pept.tracking)
heatmap_trace() (pept.Pixels method)
(pept.Voxels method)
hidden_attrs() (pept.base.IterableSamples method)
(pept.LineData method)
(pept.PointData method)
I
imag (pept.Pixels attribute)
(pept.Voxels attribute)
Interpolate (class in pept.tracking)
item() (pept.Pixels method)
(pept.Voxels method)
itemset() (pept.Pixels method)
(pept.Voxels method)
itemsize (pept.Pixels attribute)
(pept.Voxels attribute)
IterableSamples (class in pept.base)
L
LineData (class in pept)
LineDataFilter (class in pept.base)
lines (pept.LineData property)
lines_trace() (pept.plots.PlotlyGrapher static method)
(pept.plots.PlotlyGrapher2D static method)
LinesCentroids (class in pept.tracking)
load() (in module pept)
(pept.base.Filter static method)
(pept.base.IterableSamples static method)
(pept.base.LineDataFilter static method)
(pept.base.PEPTObject static method)
(pept.base.PointDataFilter static method)
(pept.base.Reducer static method)
(pept.base.Transformer static method)
(pept.base.VoxelsFilter static method)
(pept.LineData static method)
(pept.Pipeline static method)
(pept.Pixels static method)
(pept.plots.PlotlyGrapher static method)
(pept.PointData static method)
(pept.scanners.ADACGeometricEfficiency static method)
(pept.tracking.BirminghamMethod static method)
(pept.tracking.Centroids static method)
(pept.tracking.Condition static method)
(pept.tracking.Cutpoints static method)
(pept.tracking.FPI static method)
(pept.tracking.HDBSCAN static method)
(pept.tracking.Interpolate static method)
(pept.tracking.LinesCentroids static method)
(pept.tracking.Minpoints static method)
(pept.tracking.Remove static method)
(pept.tracking.Segregate static method)
(pept.tracking.SplitAll static method)
(pept.tracking.SplitLabels static method)
(pept.tracking.Stack static method)
(pept.tracking.Velocity static method)
(pept.tracking.Voxelize static method)
(pept.Voxels static method)
M
max() (pept.Pixels method)
(pept.Voxels method)
max_distance (pept.tracking.Cutpoints property)
(pept.tracking.Minpoints property)
mean() (pept.Pixels method)
(pept.Voxels method)
min() (pept.Pixels method)
(pept.Voxels method)
Minpoints (class in pept.tracking)
modular_camera() (in module pept.scanners)
module
pept.plots
pept.processing
pept.scanners
pept.simulation
pept.tracking
pept.utilities
N
nbytes (pept.Pixels attribute)
(pept.Voxels attribute)
ndim (pept.Pixels attribute)
(pept.Voxels attribute)
newbyteorder() (pept.Pixels method)
(pept.Voxels method)
nonzero() (pept.Pixels method)
(pept.Voxels method)
nrows (pept.utilities.ChunkReader property)
num_lines (pept.tracking.Minpoints property)
number_of_chunks (pept.utilities.ChunkReader property)
number_of_lines() (in module pept.utilities)
number_of_pixels (pept.Pixels property)
number_of_voxels (pept.tracking.Voxelize property)
(pept.Voxels property)
O
occupancy2d() (in module pept.processing)
overlap (pept.base.IterableSamples property)
(pept.LineData property)
(pept.PointData property)
P
parallel_map_file() (in module pept.utilities)
parallel_screens() (in module pept.scanners)
partition() (pept.Pixels method)
(pept.Voxels method)
pept.plots
module
pept.processing
module
pept.scanners
module
pept.simulation
module
pept.tracking
module
pept.utilities
module
PEPTObject (class in pept.base)
Pipeline (class in pept)
pixel_grids (pept.Pixels property)
pixel_size (pept.Pixels property)
Pixels (class in pept)
pixels (pept.Pixels property)
pixels_trace() (pept.Pixels method)
plot() (pept.LineData method)
(pept.Pixels method)
(pept.PointData method)
(pept.Voxels method)
PlotlyGrapher (class in pept.plots)
PlotlyGrapher2D (class in pept.plots)
PointData (class in pept)
PointDataFilter (class in pept.base)
points (pept.PointData property)
points_trace() (pept.plots.PlotlyGrapher static method)
(pept.plots.PlotlyGrapher2D static method)
predict() (pept.tracking.LinesCentroids method)
prod() (pept.Pixels method)
(pept.Voxels method)
ptp() (pept.Pixels method)
(pept.Voxels method)
put() (pept.Pixels method)
(pept.Voxels method)
R
ravel() (pept.Pixels method)
(pept.Voxels method)
read_csv() (in module pept)
(in module pept.utilities)
read_csv_chunks() (in module pept.utilities)
real (pept.Pixels attribute)
(pept.Voxels attribute)
Reducer (class in pept.base)
reducers (pept.Pipeline property)
Remove (class in pept.tracking)
repeat() (pept.Pixels method)
(pept.Voxels method)
reshape() (pept.Pixels method)
(pept.Voxels method)
resize() (pept.Pixels method)
(pept.Voxels method)
round() (pept.Pixels method)
(pept.Voxels method)
S
sample_size (pept.base.IterableSamples property)
(pept.LineData property)
(pept.PointData property)
samples_indices (pept.base.IterableSamples property)
(pept.LineData property)
(pept.PointData property)
save() (in module pept)
(pept.base.Filter method)
(pept.base.IterableSamples method)
(pept.base.LineDataFilter method)
(pept.base.PEPTObject method)
(pept.base.PointDataFilter method)
(pept.base.Reducer method)
(pept.base.Transformer method)
(pept.base.VoxelsFilter method)
(pept.LineData method)
(pept.Pipeline method)
(pept.Pixels method)
(pept.plots.PlotlyGrapher method)
(pept.PointData method)
(pept.scanners.ADACGeometricEfficiency method)
(pept.tracking.BirminghamMethod method)
(pept.tracking.Centroids method)
(pept.tracking.Condition method)
(pept.tracking.Cutpoints method)
(pept.tracking.FPI method)
(pept.tracking.HDBSCAN method)
(pept.tracking.Interpolate method)
(pept.tracking.LinesCentroids method)
(pept.tracking.Minpoints method)
(pept.tracking.Remove method)
(pept.tracking.Segregate method)
(pept.tracking.SplitAll method)
(pept.tracking.SplitLabels method)
(pept.tracking.Stack method)
(pept.tracking.Velocity method)
(pept.tracking.Voxelize method)
(pept.Voxels method)
searchsorted() (pept.Pixels method)
(pept.Voxels method)
Segregate (class in pept.tracking)
set_lims() (pept.tracking.Voxelize method)
setfield() (pept.Pixels method)
(pept.Voxels method)
setflags() (pept.Pixels method)
(pept.Voxels method)
shape (pept.Pixels attribute)
(pept.Voxels attribute)
show() (pept.plots.PlotlyGrapher method)
(pept.plots.PlotlyGrapher2D method)
simulate() (pept.simulation.Simulator method)
Simulator (class in pept.simulation)
size (pept.Pixels attribute)
(pept.Voxels attribute)
skiprows (pept.utilities.ChunkReader property)
sort() (pept.Pixels method)
(pept.Voxels method)
SplitAll (class in pept.tracking)
SplitLabels (class in pept.tracking)
squeeze() (pept.Pixels method)
(pept.Voxels method)
Stack (class in pept.tracking)
std() (pept.Pixels method)
(pept.Voxels method)
steps() (pept.Pipeline method)
strides (pept.Pixels attribute)
(pept.Voxels attribute)
sum() (pept.Pixels method)
(pept.Voxels method)
swapaxes() (pept.Pixels method)
(pept.Voxels method)
T
T (pept.Pixels attribute)
(pept.Voxels attribute)
take() (pept.Pixels method)
(pept.Voxels method)
timeseries_trace() (pept.plots.PlotlyGrapher2D static method)
TimeWindow (class in pept)
to_csv() (pept.LineData method)
(pept.PointData method)
to_html() (pept.plots.PlotlyGrapher method)
(pept.plots.PlotlyGrapher2D method)
tobytes() (pept.Pixels method)
(pept.Voxels method)
tofile() (pept.Pixels method)
(pept.Voxels method)
tolist() (pept.Pixels method)
(pept.Voxels method)
tostring() (pept.Pixels method)
(pept.Voxels method)
trace() (pept.Pixels method)
(pept.Voxels method)
Transformer (class in pept.base)
transformers (pept.Pipeline property)
transpose() (pept.Pixels method)
(pept.Voxels method)
traverse2d() (in module pept.utilities)
traverse3d() (in module pept.utilities)
V
var() (pept.Pixels method)
(pept.Voxels method)
Velocity (class in pept.tracking)
view() (pept.Pixels method)
(pept.Voxels method)
voxel_grids (pept.Voxels property)
voxel_size (pept.Voxels property)
Voxelize (class in pept.tracking)
Voxels (class in pept)
voxels (pept.Voxels property)
voxels_trace() (pept.Voxels method)
VoxelsFilter (class in pept.base)
W
window (pept.TimeWindow attribute)
write_csv() (pept.simulation.Simulator method)
write_noise_csv() (pept.simulation.Simulator method)
X
xlabel() (pept.plots.PlotlyGrapher method)
(pept.plots.PlotlyGrapher2D method)
xlim (pept.Pixels property)
(pept.plots.PlotlyGrapher property)
(pept.plots.PlotlyGrapher2D property)
(pept.tracking.Voxelize property)
(pept.Voxels property)
Y
ylabel() (pept.plots.PlotlyGrapher method)
(pept.plots.PlotlyGrapher2D method)
ylim (pept.Pixels property)
(pept.plots.PlotlyGrapher property)
(pept.plots.PlotlyGrapher2D property)
(pept.tracking.Voxelize property)
(pept.Voxels property)
Z
zlabel() (pept.plots.PlotlyGrapher method)
zlim (pept.plots.PlotlyGrapher property)
(pept.tracking.Voxelize property)
(pept.Voxels property)