Tutorials

This part contains copy-pastable tutorials for using the pept library to initialise, track, post-process and visualise your PEPT data.

Pre-processing

• Absolute Basics
  • pept.LineData
• Saving / Loading Data
• Plotting
  • Interactive 3D Plots
  • Adding Colourbars
  • Histogram of Tracking Errors
  • Exporting Plotly Graphs as Images
  • Modifying the Underlying Figure
• Initialising PEPT Scanner Data
  • ADAC Forte
  • Parallel Screens
  • Modular Camera

Tracking

• Adaptive Sampling
• The Birmingham Method
  • Birmingham Method recipe
  • Recipe with Trajectory Separation
• PEPT-ML
  • PEPT-ML one pass of clustering recipe
  • PEPT-ML second pass of clustering recipe
  • PEPT-ML complete recipe
  • Example of a Complex Processing Pipeline
• Feature Point Identification
  • FPI Recipe

Post-processing

• Tracking Errors
  • Histogram of Tracking Errors
• Trajectory Separation
  • Segregate Points
• Filtering Data
  • Remove
  • Condition
  • GroupBy
• Extracting Velocities
• Interpolating Timesteps