Index _ | A | B | C | D | E | F | G | H | I | L | M | N | O | P | Q | R | S | T | U | V | W | X | Y | Z _ __init__() (pept.AdaptiveWindow method) (pept.base.Filter method) (pept.base.IterableSamples method) (pept.base.LineDataFilter method) (pept.base.PEPTObject method) (pept.base.PointDataFilter method) (pept.base.Reducer method) (pept.base.Transformer method) (pept.base.VoxelsFilter method) (pept.LineData method) (pept.Pipeline method) (pept.Pixels method) (pept.plots.PlotlyGrapher method) (pept.plots.PlotlyGrapher2D method) (pept.PointData method) (pept.processing.AutoCorrelation method) (pept.processing.DynamicProbability2D method) (pept.processing.DynamicProbability3D method) (pept.processing.LaceyColors method) (pept.processing.LaceyColorsLinear method) (pept.processing.RelativeDeviations method) (pept.processing.RelativeDeviationsLinear method) (pept.processing.ResidenceDistribution2D method) (pept.processing.ResidenceDistribution3D method) (pept.processing.SpatialProjections method) (pept.processing.VectorField2D method) (pept.processing.VectorField3D method) (pept.processing.VectorGrid2D method) (pept.processing.VectorGrid3D method) (pept.scanners.ADACGeometricEfficiency method) (pept.simulation.Simulator method) (pept.TimeWindow method) (pept.tracking.BirminghamMethod method) (pept.tracking.Centroids method) (pept.tracking.Condition method) (pept.tracking.Cutpoints method) (pept.tracking.CutpointsToF method) (pept.tracking.Debug method) (pept.tracking.FPI method) (pept.tracking.GaussianDensity method) (pept.tracking.GroupBy method) (pept.tracking.HDBSCAN method) (pept.tracking.Interpolate method) (pept.tracking.LinesCentroids method) (pept.tracking.Minpoints method) (pept.tracking.OptimizeWindow method) (pept.tracking.OutOfViewFilter method) (pept.tracking.Reconnect method) (pept.tracking.Remove method) (pept.tracking.RemoveStatic method) (pept.tracking.Reorient method) (pept.tracking.SamplesCondition method) (pept.tracking.Segregate method) (pept.tracking.SplitLabels method) (pept.tracking.Stack method) (pept.tracking.Swap method) (pept.tracking.TimeOfFlight method) (pept.tracking.Velocity method) (pept.tracking.Voxelize method) (pept.utilities.ChunkReader method) (pept.Voxels method) A adac_forte() (in module pept.scanners) ADACGeometricEfficiency (class in pept.scanners) AdaptiveWindow (class in pept) add_image() (pept.plots.PlotlyGrapher2D method) add_lines() (pept.Pixels method) (pept.plots.PlotlyGrapher method) (pept.plots.PlotlyGrapher2D method) (pept.Voxels method) add_noise() (pept.simulation.Simulator method) add_noise_and_spread() (pept.simulation.Simulator method) add_pixels() (pept.plots.PlotlyGrapher method) (pept.plots.PlotlyGrapher2D method) add_points() (pept.plots.PlotlyGrapher method) (pept.plots.PlotlyGrapher2D method) add_spread() (pept.simulation.Simulator method) add_timeseries() (pept.plots.PlotlyGrapher2D method) add_trace() (pept.plots.PlotlyGrapher method) (pept.plots.PlotlyGrapher2D method) add_traces() (pept.plots.PlotlyGrapher method) (pept.plots.PlotlyGrapher2D method) add_voxels() (pept.plots.PlotlyGrapher method) append_indices (pept.tracking.Cutpoints property) (pept.tracking.CutpointsToF property) (pept.tracking.Minpoints property) attrs (pept.base.IterableSamples property) (pept.LineData property) (pept.Pixels property) (pept.PointData property) (pept.Voxels property) AutoCorrelation (class in pept.processing) B BirminghamMethod (class in pept.tracking) C centroid() (pept.tracking.LinesCentroids static method) Centroids (class in pept.tracking) change_sampling_times() (pept.simulation.Simulator method) change_shape() (pept.simulation.Simulator method) change_trajectory() (pept.simulation.Simulator method) ChunkReader (class in pept.utilities) chunksize (pept.utilities.ChunkReader property) columns (pept.base.IterableSamples property) (pept.LineData property) (pept.PointData property) (pept.tracking.Remove property) Condition (class in pept.tracking) conditions (pept.tracking.Condition property) (pept.tracking.SamplesCondition property) copy() (pept.base.Filter method) (pept.base.IterableSamples method) (pept.base.LineDataFilter method) (pept.base.PEPTObject method) (pept.base.PointDataFilter method) (pept.base.Reducer method) (pept.base.Transformer method) (pept.base.VoxelsFilter method) (pept.LineData method) (pept.Pipeline method) (pept.Pixels method) (pept.plots.PlotlyGrapher method) (pept.PointData method) (pept.processing.AutoCorrelation method) (pept.processing.DynamicProbability2D method) (pept.processing.DynamicProbability3D method) (pept.processing.LaceyColors method) (pept.processing.LaceyColorsLinear method) (pept.processing.RelativeDeviations method) (pept.processing.RelativeDeviationsLinear method) (pept.processing.ResidenceDistribution2D method) (pept.processing.ResidenceDistribution3D method) (pept.processing.SpatialProjections method) (pept.processing.VectorField2D method) (pept.processing.VectorField3D method) (pept.scanners.ADACGeometricEfficiency method) (pept.tracking.BirminghamMethod method) (pept.tracking.Centroids method) (pept.tracking.Condition method) (pept.tracking.Cutpoints method) (pept.tracking.CutpointsToF method) (pept.tracking.Debug method) (pept.tracking.FPI method) (pept.tracking.GaussianDensity method) (pept.tracking.GroupBy method) (pept.tracking.HDBSCAN method) (pept.tracking.Interpolate method) (pept.tracking.LinesCentroids method) (pept.tracking.Minpoints method) (pept.tracking.OptimizeWindow method) (pept.tracking.OutOfViewFilter method) (pept.tracking.Reconnect method) (pept.tracking.Remove method) (pept.tracking.RemoveStatic method) (pept.tracking.Reorient method) (pept.tracking.SamplesCondition method) (pept.tracking.Segregate method) (pept.tracking.SplitLabels method) (pept.tracking.Stack method) (pept.tracking.Swap method) (pept.tracking.TimeOfFlight method) (pept.tracking.Velocity method) (pept.tracking.Voxelize method) (pept.Voxels method) create_figure() (pept.plots.PlotlyGrapher method) (pept.plots.PlotlyGrapher2D method) cube_trace() (pept.Voxels method) cubes_traces() (pept.Voxels method) cutoffs (pept.tracking.Cutpoints property) (pept.tracking.CutpointsToF property) (pept.tracking.Minpoints property) Cutpoints (class in pept.tracking) CutpointsToF (class in pept.tracking) D data (pept.base.IterableSamples property) (pept.LineData property) (pept.PointData property) Debug (class in pept.tracking) distance_matrix() (pept.tracking.LinesCentroids static method) DynamicProbability2D (class in pept.processing) DynamicProbability3D (class in pept.processing) E eg() (pept.scanners.ADACGeometricEfficiency method) equalise_axes() (pept.plots.PlotlyGrapher method) (pept.plots.PlotlyGrapher2D method) equalise_separate() (pept.plots.PlotlyGrapher2D method) evaluate() (pept.tracking.OptimizeWindow method) extra_attrs() (pept.base.IterableSamples method) (pept.LineData method) (pept.PointData method) F fig (pept.plots.PlotlyGrapher property) (pept.plots.PlotlyGrapher2D property) file_lines (pept.utilities.ChunkReader property) Filter (class in pept.base) filters (pept.Pipeline property) find_cutpoints() (in module pept.utilities) find_minpoints() (in module pept.utilities) fit() (pept.base.Filter method) (pept.base.LineDataFilter method) (pept.base.PointDataFilter method) (pept.base.Reducer method) (pept.base.VoxelsFilter method) (pept.Pipeline method) (pept.processing.AutoCorrelation method) (pept.processing.DynamicProbability2D method) (pept.processing.DynamicProbability3D method) (pept.processing.LaceyColors method) (pept.processing.LaceyColorsLinear method) (pept.processing.RelativeDeviations method) (pept.processing.RelativeDeviationsLinear method) (pept.processing.ResidenceDistribution2D method) (pept.processing.ResidenceDistribution3D method) (pept.processing.SpatialProjections method) (pept.processing.VectorField2D method) (pept.processing.VectorField3D method) (pept.tracking.BirminghamMethod method) (pept.tracking.Centroids method) (pept.tracking.Condition method) (pept.tracking.Cutpoints method) (pept.tracking.CutpointsToF method) (pept.tracking.Debug method) (pept.tracking.FPI method) (pept.tracking.GaussianDensity method) (pept.tracking.GroupBy method) (pept.tracking.HDBSCAN method) (pept.tracking.Interpolate method) (pept.tracking.LinesCentroids method) (pept.tracking.Minpoints method) (pept.tracking.OptimizeWindow method) (pept.tracking.OutOfViewFilter method) (pept.tracking.Reconnect method) (pept.tracking.Remove method) (pept.tracking.RemoveStatic method) (pept.tracking.Reorient method) (pept.tracking.SamplesCondition method) (pept.tracking.Segregate method) (pept.tracking.SplitLabels method) (pept.tracking.Stack method) (pept.tracking.Swap method) (pept.tracking.TimeOfFlight method) (pept.tracking.Velocity method) (pept.tracking.Voxelize method) fit_sample() (pept.base.Filter method) (pept.base.LineDataFilter method) (pept.base.PointDataFilter method) (pept.base.VoxelsFilter method) (pept.Pipeline method) (pept.tracking.BirminghamMethod method) (pept.tracking.Centroids method) (pept.tracking.Condition method) (pept.tracking.Cutpoints method) (pept.tracking.CutpointsToF method) (pept.tracking.FPI method) (pept.tracking.GaussianDensity method) (pept.tracking.HDBSCAN method) (pept.tracking.Interpolate method) (pept.tracking.LinesCentroids method) (pept.tracking.Minpoints method) (pept.tracking.Remove method) (pept.tracking.SplitLabels method) (pept.tracking.Swap method) (pept.tracking.TimeOfFlight method) (pept.tracking.Velocity method) (pept.tracking.Voxelize method) format_fig() (in module pept.plots) FPI (class in pept.tracking) from_lines() (pept.Pixels static method) (pept.Voxels static method) from_physical() (pept.Pixels method) (pept.Voxels method) G GaussianDensity (class in pept.tracking) group_by_column() (in module pept.utilities) GroupBy (class in pept.tracking) H HDBSCAN (class in pept.tracking) heatmap_trace() (pept.Pixels method) (pept.Voxels method) hidden_attrs() (pept.base.IterableSamples method) (pept.LineData method) (pept.PointData method) histogram() (in module pept.plots) I Interpolate (class in pept.tracking) IterableSamples (class in pept.base) L LaceyColors (class in pept.processing) LaceyColorsLinear (class in pept.processing) LineData (class in pept) LineDataFilter (class in pept.base) lines (pept.LineData property) lines_trace() (pept.plots.PlotlyGrapher static method) (pept.plots.PlotlyGrapher2D static method) LinesCentroids (class in pept.tracking) load() (in module pept) (pept.base.Filter static method) (pept.base.IterableSamples static method) (pept.base.LineDataFilter static method) (pept.base.PEPTObject static method) (pept.base.PointDataFilter static method) (pept.base.Reducer static method) (pept.base.Transformer static method) (pept.base.VoxelsFilter static method) (pept.LineData static method) (pept.Pipeline static method) (pept.Pixels static method) (pept.plots.PlotlyGrapher static method) (pept.PointData static method) (pept.processing.AutoCorrelation static method) (pept.processing.DynamicProbability2D static method) (pept.processing.DynamicProbability3D static method) (pept.processing.LaceyColors static method) (pept.processing.LaceyColorsLinear static method) (pept.processing.RelativeDeviations static method) (pept.processing.RelativeDeviationsLinear static method) (pept.processing.ResidenceDistribution2D static method) (pept.processing.ResidenceDistribution3D static method) (pept.processing.SpatialProjections static method) (pept.processing.VectorField2D static method) (pept.processing.VectorField3D static method) (pept.scanners.ADACGeometricEfficiency static method) (pept.tracking.BirminghamMethod static method) (pept.tracking.Centroids static method) (pept.tracking.Condition static method) (pept.tracking.Cutpoints static method) (pept.tracking.CutpointsToF static method) (pept.tracking.Debug static method) (pept.tracking.FPI static method) (pept.tracking.GaussianDensity static method) (pept.tracking.GroupBy static method) (pept.tracking.HDBSCAN static method) (pept.tracking.Interpolate static method) (pept.tracking.LinesCentroids static method) (pept.tracking.Minpoints static method) (pept.tracking.OptimizeWindow static method) (pept.tracking.OutOfViewFilter static method) (pept.tracking.Reconnect static method) (pept.tracking.Remove static method) (pept.tracking.RemoveStatic static method) (pept.tracking.Reorient static method) (pept.tracking.SamplesCondition static method) (pept.tracking.Segregate static method) (pept.tracking.SplitLabels static method) (pept.tracking.Stack static method) (pept.tracking.Swap static method) (pept.tracking.TimeOfFlight static method) (pept.tracking.Velocity static method) (pept.tracking.Voxelize static method) (pept.Voxels static method) lower (pept.Pixels property) (pept.Voxels property) M make_video() (in module pept.plots) max_distance (pept.tracking.Cutpoints property) (pept.tracking.CutpointsToF property) (pept.tracking.Minpoints property) Minpoints (class in pept.tracking) modular_camera() (in module pept.scanners) module pept.plots pept.processing pept.scanners pept.simulation pept.tracking pept.utilities N nrows (pept.utilities.ChunkReader property) num_lines (pept.tracking.Minpoints property) number_of_chunks (pept.utilities.ChunkReader property) number_of_lines() (in module pept.utilities) number_of_voxels (pept.tracking.Voxelize property) O optimise() (pept.Pipeline method) OptimizeWindow (class in pept.tracking) OutOfViewFilter (class in pept.tracking) overlap (pept.base.IterableSamples property) (pept.LineData property) (pept.PointData property) P parallel_map_file() (in module pept.utilities) parallel_screens() (in module pept.scanners) pept.plots module pept.processing module pept.scanners module pept.simulation module pept.tracking module pept.utilities module PEPTObject (class in pept.base) Pipeline (class in pept) pixel_grids (pept.Pixels property) pixel_size (pept.Pixels property) Pixels (class in pept) pixels (pept.Pixels property) plot() (pept.LineData method) (pept.Pixels method) (pept.PointData method) (pept.Voxels method) plot_volumetric() (pept.Voxels method) PlotlyGrapher (class in pept.plots) PlotlyGrapher2D (class in pept.plots) PointData (class in pept) PointDataFilter (class in pept.base) points (pept.PointData property) points_trace() (pept.plots.PlotlyGrapher static method) (pept.plots.PlotlyGrapher2D static method) predict() (pept.tracking.LinesCentroids method) Q quiver() (pept.processing.VectorGrid2D method) R read_csv() (in module pept) (in module pept.utilities) read_csv_chunks() (in module pept.utilities) Reconnect (class in pept.tracking) Reducer (class in pept.base) reducers (pept.Pipeline property) RelativeDeviations (class in pept.processing) RelativeDeviationsLinear (class in pept.processing) Remove (class in pept.tracking) RemoveStatic (class in pept.tracking) Reorient (class in pept.tracking) ResidenceDistribution2D (class in pept.processing) ResidenceDistribution3D (class in pept.processing) S sample_size (pept.base.IterableSamples property) (pept.LineData property) (pept.PointData property) samples_indices (pept.base.IterableSamples property) (pept.LineData property) (pept.PointData property) SamplesCondition (class in pept.tracking) save() (in module pept) (pept.base.Filter method) (pept.base.IterableSamples method) (pept.base.LineDataFilter method) (pept.base.PEPTObject method) (pept.base.PointDataFilter method) (pept.base.Reducer method) (pept.base.Transformer method) (pept.base.VoxelsFilter method) (pept.LineData method) (pept.Pipeline method) (pept.Pixels method) (pept.plots.PlotlyGrapher method) (pept.PointData method) (pept.processing.AutoCorrelation method) (pept.processing.DynamicProbability2D method) (pept.processing.DynamicProbability3D method) (pept.processing.LaceyColors method) (pept.processing.LaceyColorsLinear method) (pept.processing.RelativeDeviations method) (pept.processing.RelativeDeviationsLinear method) (pept.processing.ResidenceDistribution2D method) (pept.processing.ResidenceDistribution3D method) (pept.processing.SpatialProjections method) (pept.processing.VectorField2D method) (pept.processing.VectorField3D method) (pept.scanners.ADACGeometricEfficiency method) (pept.tracking.BirminghamMethod method) (pept.tracking.Centroids method) (pept.tracking.Condition method) (pept.tracking.Cutpoints method) (pept.tracking.CutpointsToF method) (pept.tracking.Debug method) (pept.tracking.FPI method) (pept.tracking.GaussianDensity method) (pept.tracking.GroupBy method) (pept.tracking.HDBSCAN method) (pept.tracking.Interpolate method) (pept.tracking.LinesCentroids method) (pept.tracking.Minpoints method) (pept.tracking.OptimizeWindow method) (pept.tracking.OutOfViewFilter method) (pept.tracking.Reconnect method) (pept.tracking.Remove method) (pept.tracking.RemoveStatic method) (pept.tracking.Reorient method) (pept.tracking.SamplesCondition method) (pept.tracking.Segregate method) (pept.tracking.SplitLabels method) (pept.tracking.Stack method) (pept.tracking.Swap method) (pept.tracking.TimeOfFlight method) (pept.tracking.Velocity method) (pept.tracking.Voxelize method) (pept.Voxels method) scatter_trace() (pept.Voxels method) Segregate (class in pept.tracking) set_lims() (pept.tracking.Voxelize method) show() (pept.plots.PlotlyGrapher method) (pept.plots.PlotlyGrapher2D method) simulate() (pept.simulation.Simulator method) Simulator (class in pept.simulation) skiprows (pept.utilities.ChunkReader property) SpatialProjections (class in pept.processing) SplitAll (in module pept.tracking) SplitLabels (class in pept.tracking) Stack (class in pept.tracking) steps() (pept.Pipeline method) Swap (class in pept.tracking) swaps (pept.tracking.Swap property) T TimeOfFlight (class in pept.tracking) timeseries_trace() (pept.plots.PlotlyGrapher2D static method) TimeWindow (class in pept) to_csv() (pept.LineData method) (pept.PointData method) to_html() (pept.plots.PlotlyGrapher method) (pept.plots.PlotlyGrapher2D method) to_physical() (pept.Pixels method) (pept.Voxels method) Transformer (class in pept.base) transformers (pept.Pipeline property) traverse2d() (in module pept.utilities) traverse3d() (in module pept.utilities) U upper (pept.Pixels property) (pept.Voxels property) V VectorField2D (class in pept.processing) VectorField3D (class in pept.processing) VectorGrid2D (class in pept.processing) VectorGrid3D (class in pept.processing) vectors() (pept.processing.VectorGrid2D method) (pept.processing.VectorGrid3D method) Velocity (class in pept.tracking) voxel_grids (pept.Voxels property) voxel_size (pept.Voxels property) Voxelize (class in pept.tracking) Voxels (class in pept) voxels (pept.Voxels property) VoxelsFilter (class in pept.base) vtk() (pept.Voxels method) W window (pept.TimeWindow attribute) write_csv() (pept.simulation.Simulator method) write_noise_csv() (pept.simulation.Simulator method) X xlabel() (pept.plots.PlotlyGrapher method) (pept.plots.PlotlyGrapher2D method) xlim (pept.Pixels property) (pept.plots.PlotlyGrapher property) (pept.plots.PlotlyGrapher2D property) (pept.tracking.Voxelize property) (pept.Voxels property) Y ylabel() (pept.plots.PlotlyGrapher method) (pept.plots.PlotlyGrapher2D method) ylim (pept.Pixels property) (pept.plots.PlotlyGrapher property) (pept.plots.PlotlyGrapher2D property) (pept.tracking.Voxelize property) (pept.Voxels property) Z zeros() (pept.Pixels static method) (pept.Voxels static method) zlabel() (pept.plots.PlotlyGrapher method) zlim (pept.plots.PlotlyGrapher property) (pept.tracking.Voxelize property) (pept.Voxels property)